Papers and books to be read

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This is a list of papers and books selected to be read. (To be sorted and updated.)

From:

  • New Phytologist 166 (3), 2005;
  • Functional Plant Biology 35, 2008;
  • Annals of Botany 101 (8), 2008, 107 (5), 2011, 108 (6), 2011, 114 (4), 2014; 121 (5), 2018 and 126 (4), 2020;
  • Ecological Modelling 290 (1–2), 2014.

Journal: Annals of botany

  • Barthélémy, Daniel, and Yves Caraglio. “Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny.” Annals of botany 99.3 (2007): 375-407, https://doi.org/10.1093/aob/mcl260
  • Granier, Christine, et al. “Individual leaf development in Arabidopsis thaliana: a stable thermal‐time‐based programme.” Annals of botany 89.5 (2002): 595-604, https://doi.org/10.1093/aob/mcf085

Journal: New phytologist

  • Allen, M. T., Przemyslaw Prusinkiewicz, and T. M. DeJong. “Using L‐systems for modeling source–sink interactions, architecture and physiology of growing trees: the L‐PEACH model.” New phytologist 166.3 (2005): 869-880, https://doi.org/10.1111/j.1469-8137.2005.01348.x

Journal: Journal of Biosciences

  • Jaeger, Marc, and P. H. De Reffye. “Basic concepts of computer simulation of plant growth.” Journal of biosciences 17 (1992): 275-291, https://doi.org/10.1007/BF02703154

Conference: PMA

  • Sievänen, R., Perttunen, J., Nikinmaa, E., and Posada, J.M. 2009. Functional Structural Plant Models - Case LIGNUM. (Invited Talk). In: Proceedings of Plant Growth Modeling, Simulation, Visualization and Applications (PMA), 2009 Third International Symposium on , 9-13 Nov. 2009, IEEE Compute Society, pp.3-9, doi: 10.1109/PMA.2009.64

Conference: International Symposium on Crop Modeling and Decision Support

  • Kang, Meng-Zhen, et al. “A functional-structural plant model—Theories and its applications in agronomy.” Crop modeling and decision support. Springer Berlin Heidelberg, 2009, https://doi.org/10.1007/978-3-642-01132-0_16

Conference:

  • Jaeger M., Sun R., Jia J.-Y, le Chevalier V. 2010. Efficient virtual plant data structure for visualization and animation. In: Proceedings of IADIS International Conferences Computer Graphics, Visualization, Computer Vision and Image Processing 2010, MCCSIS 2010 Freiburg, Germany, July 27-29, ISBN 978-972-8939-22-9, 2010 IADIS, pp. 65-75 PDF

Books

  • Barthélémy, D., Caraglio, Y., Sabatier, S. 2009. Crown architecture of valuable broadleaved species. In Spiecker H., Hein S., Makkonen-Spiecker K., Thies M. (Eds). Valuable broadleaved forests in Europe. Leiden: Brill (European Forest Institute Research Reports, vol. 22).

  • Each architectural model is defined by a particular combination of these simple morphological features on the main stem and main branches, and named after a well-known botanist. Although the number of these combinations is theoretically very high, there are apparently only 23 architectural models found in nature. Each of these models applies equally to arborescent or herbaceous plants, from tropical or temperate regions, and which can belong to closely related or distant taxa. Detailed information on each architectural model can be found in Hallé & Oldeman (1970) or Hallé et al. (1978).
    • Hallé, F., Oldemann, R.A.A. 1970. Essai sur l’architecture et la dynamique de croissance des arbres tropicaux. Paris: Masson.
    • Hallé, F., Oldemann, R.A.A., Tomlinson, P.B. 1978. Tropical trees and forests. Berlin: Springer-Verlag.
  • Oliver Deussen, Bernd Lintermann 2005. Digital Design of Nature: Computer Generated Plants and Organics. Editor: Springer may 2005. 307 p. ISBN:978-3540405917

Greenlab:

  • Cournède, Paul-Henry, et al. “Structural factorization of plants to compute their functional and architectural growth.” Simulation 82.7 (2006): 427-438, https://doi.org/10.1177/0037549706069341
  • Feng, Lu, et al. “Comparing an empirical crop model with a functional structural plant model to account for individual variability.” European Journal of Agronomy 53 (2014): 16-27, https://doi.org/10.1016/j.eja.2013.11.005
  • De Reffye, Philippe, and Bao-Gang Hu. “Relevant qualitative and quantitative choices for building an efficient dynamic plant growth model: GreenLab case.” International Symposium on Plant Growth Modeling, Simulation, Visualization and their Applications-PMA’03. Springer and Tsinghua University Press, 2003.